Scaffold S2T7FKBa104N_1549870

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold S2T7FKBa104N_1549870

Scaffold S2T7FKBa104N_1549870

Overview

Basic Information
Taxon OID	3300002228 Open in IMG/M
Scaffold ID	S2T7FKBa104N_1549870 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea - S2t7 FKBa (104N)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Karolinska Institutet
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	551
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium loti	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022590	Metagenome / Metatranscriptome	213	N

Sequences

Protein ID	Family	RBS	Sequence
S2T7FKBa104N_15498701	F022590	N/A	LSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNVHEAPEVGESHTLTIDGVSFTYNVAEGDTAEVVANALLSQINASFADSEISAELIMREEERWDPDTETSMFMTVVDRIEISGPADVLTPEVMSGITLSSVDISGSEMHATMGETGTPGTPSTAQIHLSTLNVHEAPEVGESHTLTIDG

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