Scaffold M1t2FKB2103N_1276296

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold M1t2FKB2103N_1276296

Scaffold M1t2FKB2103N_1276296

Overview

Basic Information
Taxon OID	3300002230 Open in IMG/M
Scaffold ID	M1t2FKB2103N_1276296 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Karolinska Institutet
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	15546
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.133	Long. (^o)	10.0	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F066917	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
M1t2FKB2103N_127629610	F066917	AGG	MLDKAGRISFLKSALPNPPSQNERLSKGYRIANIMASAHASHRTHAFISLKQRGYSRNYGLVCNLGKQMAALLNMRTGASDYANTLNG*

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