Scaffold M1t2FKB2103N_1573142

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold M1t2FKB2103N_1573142

Scaffold M1t2FKB2103N_1573142

Overview

Basic Information
Taxon OID	3300002230 Open in IMG/M
Scaffold ID	M1t2FKB2103N_1573142 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea - M1t2 FKB2 (103N)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Karolinska Institutet
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4573
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → SAR116 cluster → Candidatus Puniceispirillum → Candidatus Puniceispirillum marinum	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea Examining Degradability Of Arctic, Terrigenous Carbon Compounds In The Sea

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.133	Long. (^o)	10.0	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F074917	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
M1t2FKB2103N_15731427	F074917	N/A	MRFAETKRQKPTSFLTTKAKNKLDTIRQNPINQQKKQCGDRCHYKHSQCSSAGFTPRRPRNPVDFLTDLSNKLCGRHFSHRYLPIQVLINHDMAINTLRFPWVFDQANG

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