NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVRMV2_100628947

Scaffold KVRMV2_100628947


Overview

Basic Information
Taxon OID3300002231 Open in IMG/M
Scaffold IDKVRMV2_100628947 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Santorini caldera mats, Greece - red mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)793
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameSantorini caldera, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)336
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023319Metagenome210N
F024676Metagenome205Y
F095588Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
KVRMV2_1006289471F023319N/AKMSKKIKCQKEGCSNEAYPEDMENRACNLLLCDDCYTELRYLMADYLDIHIQEIRI*
KVRMV2_1006289472F095588AGGAGMSFKKYKVEVELEFDKRPSKKVVLDRLFDVLKDNKVEYKLYKYNNKLYDFVQRRT*
KVRMV2_1006289473F024676AGGAGMENNMYVISMPYPXNIKLPDILEEDDGQVMYFETEKEAKSFLQRLYDERGYDIQALVDDNVQIMRVQ*
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