NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold KVWGV2_10732651

Scaffold KVWGV2_10732651


Overview

Basic Information
Taxon OID3300002242 Open in IMG/M
Scaffold IDKVWGV2_10732651 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey mat
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1777
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Hellenic Volcanic Arc

Source Dataset Sampling Location
Location NameKolumbo Volcano, Greece
CoordinatesLat. (o)36.5Long. (o)25.45Alt. (m)Depth (m)494
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006892Metagenome362Y
F058519Metagenome135N

Sequences

Protein IDFamilyRBSSequence
KVWGV2_107326512F058519N/AMANHLKIIGEAYEKFKDTNTSVSANKEPHSLRAMKRYFLTKEQAKKCSNASLKAGTIGHTIVETCLNKNLTVDKVFASEEIQKEIDAYFPIDKTDEMKFKFAIKFLPETANNHLENFKELPKQKWKTEVEFIKWIEPVNVPFRMFIDAFGKTHINDIKYKLPTVKFAPLKTKQTKENPNRIGDWTWSHPKLDERVFTSDLMQIALYSYTTGLKPSLSYASAKERYLFTEDNCEELKQENLKLWLNELIAYEIAWEKKLKAANGSVEELLWLNIPDFSDIRKKSFWWNSIPKEYMENYLKTYV*
KVWGV2_107326513F006892N/AMSDMGIIKPLRDRIRDLEVINESHQKKNGQLRVEIQEKNKKIEELIERINNPLKKMRGFGDL*
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