Scaffold C687J29039_10000330

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold C687J29039_10000330

Scaffold C687J29039_10000330

Overview

Basic Information
Taxon OID	3300002243 Open in IMG/M
Scaffold ID	C687J29039_10000330 Open in IMG/M
Source Dataset Name	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	18782
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (76.19%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location Name	Rifle, Colorado, United States
Coordinates	Lat. (^o)	39.53	Long. (^o)	-107.78	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069779	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
C687J29039_100003302	F069779	GAG	VCRALRVLCVAEDTQALSALKRATASTEWELVAGATDEAEALRQLHEDRPQVVVVFGPFGRFVSRALEAYPALRVVADRDLPGASAVVTETEEVRAAVLGRTRPGGPVGPGRPGGSGV*

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