NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ26739_100033620

Scaffold JGIcombinedJ26739_100033620


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100033620 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4562
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011038Metagenome296Y
F061442Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1000336204F061442GGAGGMFIALESVLRGIVKDMGSPKGISEFARVLGDHPDKYSMFSAVPDQTPSTQHVRRYRVALGQFDCEKRNAGHTPSAVFGAFMNMYMDLGSQAIGALELANRIEAWDPEHQAKLRQAGLRSSFELDDEEGSVFIALTADRYPMGLMGRRNTDGDLFVSKLVNCPQVDFDTAVQEIKEMGLGLILGSDAEELLCKMEQVTETK*
JGIcombinedJ26739_1000336206F011038GAGMNAPAQFQYIPGGRRPSLKLQMXEILRFWXEVACENLQSSGANLTKXQLLAQILQQYERRGDAMRYLNEQGKIAWKASPRFLMMLADAERDARDDLAEFP*
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