NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ26739_100047247

Scaffold JGIcombinedJ26739_100047247


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100047247 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3905
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023536Metagenome / Metatranscriptome209Y
F023911Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1000472471F023911GGAMPKSLRKHELTAAEPAERPLPQAVKKQKLGVLLVTADESLWPQIGADLNAGLVLKQLDTIDELISSVPSGQAGIVLWDARNHPDPAAVLSRLHLHSSRFAIVALDDATSGSAWTLPIQHRQIVAHVGLPIVDAVLSGALDNAHEEVNSRLALLGDGSAPPPAAPVAPKKSWLVPAVIG
JGIcombinedJ26739_1000472477F023536GGAMTRRRHSIFWLLPAAAAAFLSPAARADNFGGVRYDRQRDQLVVTMIYRGTNPNHKFSLKWGECEANQTGNLPGVTAEILDDQFIDPEEQDFRKTVRFSLAGLPCPRPASVTLRTAPRFFYTLTIPG*
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