NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGIcombinedJ26739_100063695

Scaffold JGIcombinedJ26739_100063695


Overview

Basic Information
Taxon OID3300002245 Open in IMG/M
Scaffold IDJGIcombinedJ26739_100063695 Open in IMG/M
Source Dataset NameJack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3386
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000678Metagenome / Metatranscriptome940Y
F018062Metagenome / Metatranscriptome237Y

Sequences

Protein IDFamilyRBSSequence
JGIcombinedJ26739_1000636952F018062AGGCGGMKPKRKAAKTKSKRSKMPKWFPVDDEMKELSAMLEKEVSDWPGVSKRPMFGYQGFYRDGVIFAALPRSRAMKSPRSLMFKFASMSPAILDSAKKDSRIDTNARAPGPGWLMFEIDEASATKDALDWLGRAYEAAKK*
JGIcombinedJ26739_1000636956F000678AGGAMDKFEEFGKRMDDEFTRIKSIKNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKFSEAAAWIEARNAARNPQNPRSS*
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