Scaffold JGIcombinedJ26739_100296139

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGIcombinedJ26739_100296139

Scaffold JGIcombinedJ26739_100296139

Overview

Basic Information
Taxon OID	3300002245 Open in IMG/M
Scaffold ID	JGIcombinedJ26739_100296139 Open in IMG/M
Source Dataset Name	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1502
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Algoma, Ontario, Canada
Coordinates	Lat. (^o)	46.42	Long. (^o)	-83.37	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F040835	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
JGIcombinedJ26739_1002961392	F040835	N/A	MQTKCTLAQRAAEYLRRVAALTGAKEDDDGTYHLTAGGTHFLVDAKIVRVISPRSESTCFSVAADPDMPSAEAVASALLQLKNNPRLFEKWRHRQGDTFKANGQRFGDTYWLTGDET*
JGIcombinedJ26739_1002961394	F000217	N/A	IVTFSSHGDKTLLEYDPATADMDEVNEVIAEYEAKTGAQPFDMATGERIEKVTSEQNEVLMVHPIAGG*

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