NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29589_1012642

Scaffold B570J29589_1012642


Overview

Basic Information
Taxon OID3300002279 Open in IMG/M
Scaffold IDB570J29589_1012642 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)783
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010898Metagenome297Y
F102504Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
B570J29589_10126421F010898N/AMDKINIYINSKNRSENENANKFTVKIPNNLLRLNRDEYFTLNVNGFYCYNSWFNCIEGFNNMFQIVMCNMNDEITSIFDYTLQDGNPNVNDVRTNLNXLLLNKVVVSYDRIRNKFLYKRTLPIT
B570J29589_10126422F102504N/AINCFDTHGNGQTDPVIFTAQTHPSQQRLGTLTNNAIYQNTETSPVFYNPYPEMLYNFPISSNFLNNRYFDFTLIMHFMPGDFINLTTDQQYFDLFHISFIVYDLDEEELLLTSTQDVDFKKFGETLPRKI*
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