NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24891J29808_1000704

Scaffold JGI24891J29808_1000704


Overview

Basic Information
Taxon OID3300002301 Open in IMG/M
Scaffold IDJGI24891J29808_1000704 Open in IMG/M
Source Dataset NameLentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12880
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (65.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location NameBrandenburg, Germany
CoordinatesLat. (o)53.1666Long. (o)13.0333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021233Metagenome219Y
F029972Metagenome186Y
F052345Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
JGI24891J29808_100070414F029972N/AMGKFQQKFSQRQERELEEQWPLAHRTVGSGNKWEKGDLSTEEQFNISFVVEAKATQAASFSITKKIWDTIKEHAQNRSWLARPILAIRLYGPTVEKTSWGGERENTPENLPVELDLICIDKNDFLELYYDYLRLKEEENSGQ*
JGI24891J29808_100070418F021233N/AMSTNKPLRRGLEGLTEPELGTSHNDKFGELHEFAVRAFTWKTKPEDLAMLDTVERVVDDFMKDYVDPAEVIVARFNTDKNITADEADRLFLNLQSAITAIDEEVTRRYLKAQYSYYMLDDKYWDAWRKPSGGTQKDLEAVAKLETREDRQFYFVQYAAWRMINDKVNSLKATQRYIQQQIYRRS*
JGI24891J29808_100070420F052345GAGGMDRRTREFTELVKMTPTTQDLLSEEIDGELYLYKSSPQCKICTTSDDLKNIIDSLLLFPKSYKEVLQAIEPIQDKLGIDGSERINYENIRNHQKRHLPFEKRMVREIVEKRAAEKNRSILDAGDRLLTAEAFYEIIVAKGFEGIAQGYDKPTLTQTMYAMDMLTKLEKEAKDDYRPEELVNQLDMILIAIREVLPADMKETLFNKIEELQLGTSTKKKPKRIKAAEVIDVEYIDEDLEEGL*
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