NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24217J29970_1046342

Scaffold JGI24217J29970_1046342


Overview

Basic Information
Taxon OID3300002344 Open in IMG/M
Scaffold IDJGI24217J29970_1046342 Open in IMG/M
Source Dataset NameWastewater treatment Type I Accumulibacter community from EBPR Bioreactor in Madison, WI - N_134min_Aerobic (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)532
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Spiralia → Gnathifera → Rotifera → Eurotatoria → Bdelloidea → Rotaria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Wastewater Treatment → Wastewater Treatment Type I Accumulibacter Community From Ebpr Bioreactor In Madison, Wi, Usa

Source Dataset Sampling Location
Location NameMadison, WI, USA
CoordinatesLat. (o)43.078418Long. (o)-89.386482Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039434Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
JGI24217J29970_10463421F039434N/AVINHLSIAMGILKGKDIALEHIEKSKLSFLATLSECEKGPSTNTMPPKDHFTLKFDRDTIKNLKGRVYENMKQYSYEQRGESIPVFLNNREGEDPQTGLINPIKPDTPVVGRQYVSCVYDDLKHIDCLIEIEWDEIDELVKTANARRKSIV*
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