Scaffold B570J29580_103082

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B570J29580_103082

Scaffold B570J29580_103082

Overview

Basic Information
Taxon OID	3300002349 Open in IMG/M
Scaffold ID	B570J29580_103082 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 20JUL2012 deep hole epilimnion
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1028
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019483	Metagenome / Metatranscriptome	229	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29580_1030823	F019483	N/A	MASAQGIATIDFGSIPGSNEASVAVTGQTTIGAGSKAEAYVMADDTTVDHTANDHRYFSILAGLSCGTPTAATGFTIYARSIEKLTGTFKVRWVWAD*

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