NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29583_1000772

Scaffold B570J29583_1000772


Overview

Basic Information
Taxon OID3300002350 Open in IMG/M
Scaffold IDB570J29583_1000772 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2596
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016922Metagenome243Y
F026794Metagenome196Y
F057879Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
B570J29583_10007721F026794GGAMMHIDNPGSISERDLRVTASQQFFADLDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWCYELMERHGRPMHTWTPITEWDGHFRPECLSLTYRTDNPFATE*
B570J29583_10007722F057879GAGMQMSTEPSTEQTNPRDTVRPEPVPTGGQQEPSSPFSDASQVPPWEL*
B570J29583_10007726F016922AGGGGGMNPIRISSRAIQCVADAEGATEYAIRYGGRDFIVTAHSRLEADIAVEYYRAPEADESQPDLLK*
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