NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29624_100136

Scaffold B570J29624_100136


Overview

Basic Information
Taxon OID3300002363 Open in IMG/M
Scaffold IDB570J29624_100136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6400
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012014Metagenome / Metatranscriptome284Y
F021096Metagenome / Metatranscriptome220N

Sequences

Protein IDFamilyRBSSequence
B570J29624_10013611F012014N/AMNILSKETLIGAAALGAGAVAAKVVQNKVVPMVLPTASDNVKNLITLGIGILTPTIVKGSIGTGLGAGMIATSVAGLVDPFLKTAGITGYGEGYMGEVLMGEDISAGAPLMGAVDTFSAPTTDFTGGDAGEMDF*
B570J29624_10013614F021096GAGGMSTLVTLNFPNTGNYQQSYYMASQTMLDGDNCTITALEIVPSTELGTLPTGQTNVDASILPNGVFYVANLKRQIIAQIPLYTMVRTNNGGKPTFTFFNDQVWQNCYVEFTSTGFTTTITPLTFRVYYVNKQKN*
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