NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29602_1007718

Scaffold B570J29602_1007718


Overview

Basic Information
Taxon OID3300002371 Open in IMG/M
Scaffold IDB570J29602_1007718 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)612
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y

Sequences

Protein IDFamilyRBSSequence
B570J29602_10077181F001125N/ANKMGDRANFGFKDQKGDTVFLYGHWAGYDMLAKLANAVQAAEPRWQDPSYATRIAISHLIGEDWNQTLSWGIYVNQLGDNEHKVPVINWVTQTFTLYEEDLETVVFSLSLAAFVDKYSRLIMV*
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