NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29628_100553

Scaffold B570J29628_100553


Overview

Basic Information
Taxon OID3300002373 Open in IMG/M
Scaffold IDB570J29628_100553 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 29OCT2010 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1446
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023523Metagenome / Metatranscriptome209N
F086627Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
B570J29628_1005531F086627N/AMKFIKYKQVARITLYGFDDLNRNNNSSVFTEPLNSVYYTQNIIAGVQVGNNAKRMRFQIKGLDNVKLSENARFCMESINVPILYDNIYERKSLSQTIVRMSNLSSINCFDSNGN
B570J29628_1005533F023523N/AMISEQSLEGWDNNPVKFSNVKYPQTKDDNAPKNFFLAIFCGSRGSGKTYLLTKLLKLLEEKKMYYEGIEIPQRIILICSTAHSDSNRVFKSLKNLNWDDDVIEDYNDSLLQDKMEELKSDLDHAKEYKLYKSVYKKFKECKDIDELNDDEMKLLYKFDFVKFQDLEKPKYPDGFITHYIIDDMIGTNIFKNGRSLFTNLCIRNRHITPSNIIISTQSMMMIPKTIRLNANLIALFKFANKNTILDDIYPTMSAFITEEQFKDL
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