NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29636_1003212

Scaffold B570J29636_1003212


Overview

Basic Information
Taxon OID3300002384 Open in IMG/M
Scaffold IDB570J29636_1003212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009202Metagenome / Metatranscriptome321N
F010908Metagenome / Metatranscriptome297Y
F025437Metagenome201N

Sequences

Protein IDFamilyRBSSequence
B570J29636_10032122F025437GAGMQMRPFELRQLKVSKEQYFARLGFQDNGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMACIDKPDFEAMEQELNKLNEVVAELSKYKELYLTLKRTFDEF*
B570J29636_10032123F010908GAGGMRQIFSPFQKYECFAVDGVDYLVVDYTIIQDKDDNLVEWASEMKFKRLKDHKHFTMPITKVITNHQEGRAKHCKCK*
B570J29636_10032124F009202N/AKQAADKANGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANSKLRVDSEQMIYEIQRLQGIIEDNL*
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