NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29636_1003310

Scaffold B570J29636_1003310


Overview

Basic Information
Taxon OID3300002384 Open in IMG/M
Scaffold IDB570J29636_1003310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 08OCT2012 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1113
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055558Metagenome138N
F072091Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
B570J29636_10033101F055558N/ASTGNLMTYNFALLVMDRVFESESNTIEVLSDTAQIMTDIFALIEDNTQNDEDFEIVINGNASPFYDSKTDILAGYAINFQVLTPYLHNTCVVPV*
B570J29636_10033103F072091N/AMATIDINKLPDALDTYLDDVNQGSLLQQIIVDWWNKKVIPPIWANLDNKNINASSVLRQSFVPGQITKSPTSINTILLAEDYWEFVEYGRKPTRNGHXEGTPYLWQSIKEWMAFKGIKPP
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