NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29625_1000443

Scaffold B570J29625_1000443


Overview

Basic Information
Taxon OID3300002400 Open in IMG/M
Scaffold IDB570J29625_1000443 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26AUG2009 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4356
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001125Metagenome / Metatranscriptome769Y
F023344Metagenome / Metatranscriptome210Y
F050377Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
B570J29625_10004431F050377AGGAMSTPTTTREYLKTQGIAVGKRGRFSAAALGVISKAAQEGVV
B570J29625_100044310F001125GGCGGMGDRANFGFRDSKENVVFLYGHWAGYDMLAKLANAVQAAESRWQDESYATRIAISHLIGEDWNQTLSWGIYVNQLGDNEHKVPVIDWTNQTFTLYEEDLKTVVFSSSLAAFVDKYSRLVMV*
B570J29625_10004438F023344AGGCGGMEAFTDTVGEHILGAIQVDIEQHLFEQWNNANLDEGSAYAEWRFMQFAPDNLKQSYNEYYGYIEGDEFLL*
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