NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29611_1002134

Scaffold B570J29611_1002134


Overview

Basic Information
Taxon OID3300002401 Open in IMG/M
Scaffold IDB570J29611_1002134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 26JUN2009 deep hole epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1971
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010598Metagenome / Metatranscriptome301N
F067403Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
B570J29611_10021341F067403N/AMLVFIKLTVIFQLTKIQNFLSEYALELASTDFDKIYSRNGAVQYEDYTVIHHSGTFHANSFRKLCINEYTTPFRATKNMNLTDIFTTYSIQEAWVDLYRSKVSGLLLDKTDYPPVTITVDAEIDSARVHTPAAGSIPNNVLETHYVLGSTRATVVPSSGKTMSFFYKPVYNTSIDTIADGLASIIPHMSSVMCLKANQYPNTPKTKKALEDLVNLMLDQVNKEVTLFKALILEWRFKENAIPIAVPNNYTVNMSLDVDDVVRENLINCRRQKENLKQGFRFITNPIDLALLMFEHELLLAEIKSIRQDILTPLTNPLSLIDLNNLDETSGTNPTLLKHESLSGFYLQVERRLGYIIPAQGESKINSFGRANPFYKVTLMDYLTLGISVFLAFGFLIQCSMVTANTFMRWRAERDERIREQERTRFRVNRIERSQPIKETVLPTCENCS
B570J29611_10021342F010598N/AVIIFGGSNAKRIVPFLLQLTKGKGIRIEDRTVSGHSLGDLRNFPKSTEVREKDFLFVLSGGNDIFEKHIKIHRRFGKVHKICLTKCVPNPLSSIQKLYENLKEKLKDLKCHKYVITNPYRHLYCCPEHYDVTYYGNILRAQNAANSCLIKTLKAAAVILKVEKIIGLNCKEKRKGYPDHMIDSVHLKQKFYLKAAENLCKIIAEKSSSC*
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