Scaffold B570J29032_109290579

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold B570J29032_109290579

Scaffold B570J29032_109290579

Overview

Basic Information
Taxon OID	3300002408 Open in IMG/M
Scaffold ID	B570J29032_109290579 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	674
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025977	Metagenome / Metatranscriptome	199	Y

Sequences

Protein ID	Family	RBS	Sequence
B570J29032_1092905791	F025977	N/A	GEIFLKMSQAELTPNMFYILYCMHAGIVPDKSVNSSLEITRLKANDWLSEDLDLTNKSIIFMVEIDGYFKKSKKKTSRNLMGDGFMQNIEAYVSLFPNKKLSSGKYARVPAKNLENSFRWFFETYDYDWETIFLATQKYISEYESKNYEYMRTAQYFIRKQNLDKSWDSDLATYCEFLKDSPDDDVDTFGELIV*

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