NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109724701

Scaffold B570J29032_109724701


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109724701 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1138
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007691Metagenome / Metatranscriptome346Y
F009531Metagenome / Metatranscriptome316Y
F022197Metagenome / Metatranscriptome215Y
F092053Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
B570J29032_1097247012F009531N/AMTKQVAIYEMNYSVSPGGVDCWEATIQGYGESTTASDFKTAGEALNWVLDRYPAEMLELVVTSHQAYEKEYV*
B570J29032_1097247013F022197AGGAMTTQTISDPMLQPYYSCDLAISITNIKAKNAHHAEAVMQTFIDEIGKIMTDELSWDDAQWDIQENVFLPELGEWHTK*
B570J29032_1097247014F007691AGGVAYKVNTIDELINEIYESNYSHLEFEENMGGEDCDCHIHITLNTMAKYAGIEVG*
B570J29032_1097247016F092053AGGAMKIKISKEHKEELKDQADQIVYFEASMSNEDDAVKGTYLRLVEIYKVAFEAGVNSK*
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