NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109889324

Scaffold B570J29032_109889324


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109889324 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2031
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007359Metagenome / Metatranscriptome352Y
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F020860Metagenome / Metatranscriptome221N
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
B570J29032_1098893241F020860AGTAGMEITKAKKLKEGGYALYGIDPKTKTETQVGYIGEGLTLEAWLPKGVKIENS*
B570J29032_1098893242F016115AGGAMVGRDGDVAIYKKQLDDPESQNYHYEVVAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWGFTCVSREDADKRFVQLQEKLSAYVATATLPNGEKRGRGRPRKIDLTKTELVVS*
B570J29032_1098893243F010746N/AMTYKCAVSGEAIPPERVEALQVLGVPETLWTKKEYSQTRKLKAVYAGDDGSNDIVICDAVDGGNLFENSIVAEVENE*
B570J29032_1098893244F035200GGAGGMNNKFIVLRDGVRVSEDMHPSETSAEVEANYWREIIKRWPDGTKVVVKKIGG*
B570J29032_1098893247F007359N/AMKLTKQNLGAHWVIGIKGNKDEIEQFHNRVYNWGGTNGELQWMSNDFAYFWITLEKLERVMFKYVMNGITDKLGKKFRGAKGGLKAVAMNRIKNTIDNIPTENFVRTAQVEDIYSLGTISAEKLDTDS*
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