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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002408 Open in IMG/M |
| Scaffold ID | B570J29032_109949401 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4883 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023295 | Metagenome / Metatranscriptome | 210 | Y |
| F035672 | Metagenome / Metatranscriptome | 171 | Y |
| F048257 | Metagenome | 148 | N |
| F063343 | Metagenome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| B570J29032_1099494012 | F048257 | GGA | MTDFPSSVAARKCLQGEGCSETVYWVLRRTLLINSGMRLVGERKKTLKKALYGSLAVQAFVMAWTASHMDEEKASLPSGETALSGNAFEILGTYLTRSVIVGTGLWLGGERKNLIRNTLASTAMIQATVLLWAKGKEL* |
| B570J29032_1099494013 | F063343 | N/A | VNYLILLGILSLFIFGQKVRTNWVSGIKSTLTKLMIPGADRRLFSTFTASPIGWIRNAASWVRVFNWTGYAAGINGLGGVGGGTLITRKHVLLAHHVPYPARPFDIFFVNANSRTFQYKVVNVQQVGDTDIAIGTLDRDADASLNVYRVLPDNWLQYIANKSSSFNVMGVAGTEVSVTLPVLYANQDRKVSTADVTQVRLGTADMSIPSFEVARSFGEPIRVGDSGNPIFVQIGNELVLLGAFWKLGTGNVIASFPWLIAYRGAIEKVIGQKLQVADMSGLDRIA* |
| B570J29032_1099494014 | F023295 | AGGAG | MLLSMLQGLGCQTRVILVPDGQPVMLAEPVRAKVYAFDSTGKLVPSSNRVILPAGWYALPRK* |
| B570J29032_1099494016 | F035672 | N/A | MNLHDTLRDLGIGVGGPAGGLFIANIVPDPVIANISVTLGSLAALTVIIKNVLDIWSNRNK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |