NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold B570J29032_109956636

Scaffold B570J29032_109956636


Overview

Basic Information
Taxon OID3300002408 Open in IMG/M
Scaffold IDB570J29032_109956636 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8519
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021096Metagenome / Metatranscriptome220N
F040589Metagenome / Metatranscriptome161Y
F062696Metagenome130N

Sequences

Protein IDFamilyRBSSequence
B570J29032_10995663611F040589N/AMSIAQTAILASALKGGGSSTPKSQPTSFSESIAQKPIQWLIVGGVVAYAVSKIVGKVVKTAGERSQETAETTTSSDNPWSYKAFLSQNIPAGTNLLTAAKSYAEAKKVYDSLNTYFVDDADIVVGVFAALPSKVQVAQVVQAFETYYKRNMLQYLQEGKKTFDFGSGGLSDALYTRIIENVKRKPKF*
B570J29032_10995663613F021096GGAGGMAAVVSPIINYFLKNNLCKDYTAIEGEMSTLVTLNFPNTGNYQQAYYFASQTMLDGQNCTITALEIVPSTELVTLPTGQTNVDSSILPNGVLYVSNLKRQIIAQIPLTTLVRTNNNGKPTYVWFNDQVWQNCYVEFTSTGFTTTTTPLTFRVYYVNKQKN*
B570J29032_1099566366F062696N/AMKTYGTIRIFCICIVGIYLNSCSPQYRLQRLLKNHQYLYENFRYDSIRIENAVVQDSLFFFTKEKDTLYFNNATIYRNADTLRLVQSCPPCTTTITKQILQPTKEYFKEKRYERSLREKLEDAIFPFVIGMLVCALIIKK*
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