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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002447 Open in IMG/M |
| Scaffold ID | JGI24768J34885_10000195 Open in IMG/M |
| Source Dataset Name | Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17148 |
| Total Scaffold Genes | 35 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 31 (88.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Lake Ontario | |||||||
| Coordinates | Lat. (o) | 43.933506 | Long. (o) | -78.003845 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008237 | Metagenome | 336 | Y |
| F012770 | Metagenome / Metatranscriptome | 277 | Y |
| F046323 | Metagenome | 151 | Y |
| F079979 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24768J34885_1000019510 | F046323 | GGAG | MKQQFQVVYETKGVKVVNVWLPEGTTTPQQWATMTYAEQDAWLYDNQDEAHLQWTDEHEGVAVNVLPVSNLKAVV* |
| JGI24768J34885_1000019516 | F008237 | GGAG | VTLEWARIEPWQYVVDSVASEYHRKFTDIELEDIRQSLYQWFLEHPNKLDTWEAIGVKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFYYEADMVEALLTPVLRSEWGQINKVDLGRPGRPSAPNEGGNMMAMMIEIDYAYWKLTKEDRKVLFLRHAEAMDFPDIAKELELGSEDAARMRHKRGIRKLINKIGGFKPYSDNDFDSAESVQHESSEA* |
| JGI24768J34885_1000019519 | F012770 | N/A | MAEEETPPPHNYCHDCHITFEDSFELVDHYLEEDEEFDPYYILPNGFKLKLGSLLRFMFNHADEPDQIKLITQSTYVTLFASENGYELVDELVEDMVVKSALQDFDQNLAKLLEEETNDDGSGA* |
| JGI24768J34885_1000019522 | F079979 | GGTGG | VIREEEDDTTQEVRALVLLGLKTEVAALVEKIQAAKVPVTDEWTDGLNAGLEWAVRILNKDKSAS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |