NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24768J34885_10003560

Scaffold JGI24768J34885_10003560


Overview

Basic Information
Taxon OID3300002447 Open in IMG/M
Scaffold IDJGI24768J34885_10003560 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5067
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019798Metagenome / Metatranscriptome227N
F025224Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
JGI24768J34885_100035602F025224GAGMSKAAWLPGSLFDNIDKFANSLGYQNAAVAMELAMVGWKSPEERDAFILAITGEDVQGGTEKNYIKSFRG*
JGI24768J34885_100035604F019798AGGMTTLVAIQGDGWSVMGXDSRLSDDHGRFQVSKTPKIVENNGILIAGCGSSRTSNVLHYGYVQPKPTLKENLDVFMSTKFIPRMRKEFIDAGIDMKEDGDIAQNEGGFLISVKGEVYSISDDYSWDTDIRNVYVMGSGGDVALGALAALGVEKVKTXKEAERIIRKAIAXAIQYDNMCSEPIHIFTQVK*
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