Scaffold AADWTP_10002740

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold AADWTP_10002740

Scaffold AADWTP_10002740

Overview

Basic Information
Taxon OID	3300002461 Open in IMG/M
Scaffold ID	AADWTP_10002740 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from a drinking water treatment plant in Ann Arbor, Michigan, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	32460
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (71.88%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Freshwater → Freshwater Microbial Communities From A Drinking Water Treatment Plant In Ann Arbor, Michigan, Usa

Source Dataset Sampling Location
Location Name	Ann Arbor, Michigan, USA
Coordinates	Lat. (^o)	42.296774	Long. (^o)	-83.762994	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003908	Metagenome / Metatranscriptome	462	Y
F020435	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
AADWTP_1000274019	F020435	AGGAGG	VTRFSEVVSALSPTQFTELALVLFVAVFVAVAWRHGTKRRAVEHAACAQLPLANDEAP*
AADWTP_1000274031	F003908	AGGA	MKTWICTAAVLAATTSCGSPAKKKLTLQEMIAADPLPLAKGAKWSYNVTLTKFDVATNKEITSTMQWTTEVIDAKEQNGVTAYRVKGWPTDLADATEGTPVASERTILRSGNNIMFGGPNDWAGEPSLDGAEGWFSWPVIDGQEICPSAEMVYCWQVSAVDSGYRLTFYTGPDEQAFDIEPATGIARFYYAHHGTTNEVEAVLSEYSAPKR*

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