NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24701J34945_10117949

Scaffold JGI24701J34945_10117949


Overview

Basic Information
Taxon OID3300002469 Open in IMG/M
Scaffold IDJGI24701J34945_10117949 Open in IMG/M
Source Dataset NameMicrocerotermes parvus P3 segment gut microbial communities from Pointe-Noire, Republic of the Congo - Th196 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)987
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePointe-Noire, Republic of the Congo
CoordinatesLat. (o)-4.7Long. (o)11.83Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027231Metagenome195Y
F057471Metagenome136Y

Sequences

Protein IDFamilyRBSSequence
JGI24701J34945_101179491F057471AGGAMIRTIHDATIVNKGRKDRKTNMEIKKSNAVVQYSKFVKGIDSTDQYLSYYSVLQ
JGI24701J34945_101179492F027231N/AVRLVQALLDRNVRVYGTRRANRGIPRDLEGEGKXLKKGKSAFRRNGEVMVEVWKDKTCANDTYDP*

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