NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1461521

Scaffold metazooDRAFT_1461521


Overview

Basic Information
Taxon OID3300002471 Open in IMG/M
Scaffold IDmetazooDRAFT_1461521 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)667
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005558Metagenome396Y
F027417Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_14615211F027417AGGAGMAYDYRVTFVTDYLTINTNVSLELDDNTGNLSGEAYEQAVINGMNNIEDEIGKIDETIINDITVTLLLDDEEIDLESEGE*
metazooDRAFT_14615212F005558GAGGMDEVMYWSDLAELTHATQVEKFNFCTCEDNEGQENPYADCPTEGEGK*
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