NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_1500065

Scaffold metazooDRAFT_1500065


Overview

Basic Information
Taxon OID3300002471 Open in IMG/M
Scaffold IDmetazooDRAFT_1500065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1943
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028809Metagenome190N
F050365Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_15000652F050365N/AMTQTEYCKHSGLSKGRVSQLVANGMPLTSPEEADAWRGSRKGIGGRPSDAQRLAAMQQQQTAPEASGGPYRPPEAAIAINATLATEDSPQGAYERQKQIERAAYNLASEALAARSLDAGRMVTVHATAAKNLISAREDVISLSEKERTLVSGSWVKKVMQDHDGAVASLLKSMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHQTDPWKS*
metazooDRAFT_15000653F028809N/AVEILNCQTPAGIEALRQNRIALKAIERQTGFEFLGISNDEPSRIDGFIHDPAKGIIVGSYEVKTRNYGLTKLQTTYGNRWMISWSKLQAALEVSKHTKLPFFGILHLHCDDSVLMVEIFNRNASWAANHQVTDKTVNGRTERMALIDMSGAAHYQIKSGQIPEELY*
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