NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold metazooDRAFT_10777341

Scaffold metazooDRAFT_10777341


Overview

Basic Information
Taxon OID3300002476 Open in IMG/M
Scaffold IDmetazooDRAFT_10777341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from San Paulo Zoo lake, Brazil - NOV 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)558
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake → Freshwater Microbial Community From Sao Paulo Zoo Lake, Brazil

Source Dataset Sampling Location
Location NameSao Paulo, Brazil
CoordinatesLat. (o)-23.651072Long. (o)-46.620675Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006656Metagenome / Metatranscriptome367Y

Sequences

Protein IDFamilyRBSSequence
metazooDRAFT_107773411F006656GGAGMQELPDYFDGIIEILTTYIEHKTDHFTLQTYGGDYINGPYVQALQEHDNILLIEAVSNEFLVPELNEHGQQAMVFMGWRFFPERYLPNYAQFIDQSQLSPREIAIKMAQALHFAYGVDETFSFEIAPKLDIAEKQISRIGLIRTN*
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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