NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25127J35165_1040243

Scaffold JGI25127J35165_1040243


Overview

Basic Information
Taxon OID3300002482 Open in IMG/M
Scaffold IDJGI25127J35165_1040243 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022311Metagenome215Y
F032077Metagenome181N

Sequences

Protein IDFamilyRBSSequence
JGI25127J35165_10402431F032077N/AIDMGTDMDSEETSIELKDRMRDALAPMLAMEQERTAKNSLANNNPQRWLAAASMFLAGSSMHDVKKELDMHHYIARRINGIVKTCDEARVFRQERAMQLASTIDEISSIGEKIAASYLDGSAEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDALPEAEVIDVEGDG*
JGI25127J35165_10402432F022311GAGGMAKSLIDESYDPIYDQIRGILGEHFENYCFIVMDEKGELFYDYNHLPAGRMLLNEMQLELGDDNIEIEWEXESDPDDLEDDAVD*
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