NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25127J35165_1051702

Scaffold JGI25127J35165_1051702


Overview

Basic Information
Taxon OID3300002482 Open in IMG/M
Scaffold IDJGI25127J35165_1051702 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)888
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED161(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017658Metagenome239Y
F025054Metagenome203Y
F070220Metagenome123N

Sequences

Protein IDFamilyRBSSequence
JGI25127J35165_10517022F025054AGGMTRSKTATLWELDCILHRVTKLTDRNFTIFPPSDXXGXLLVDETIEYYKKEIIKTINQIQ
JGI25127J35165_10517023F017658N/AMNFMEEINKETQAMLKQISIRKAEKTANARKRVAELKKLIKFWEQDL*
JGI25127J35165_10517024F070220GGAMKCNKCGGLEIKVRETIYRKAEQTKGFRNKSITPYVYRRRVCLSCGHRFTTREYTIPDLIAFGKQGYLE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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