NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1000376

Scaffold JGI25132J35274_1000376


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1000376 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11953
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (59.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000413Metagenome / Metatranscriptome1169Y
F000983Metagenome / Metatranscriptome814Y
F004488Metagenome / Metatranscriptome436Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_100037612F000413N/AVKKFYSIKLKQFKENIPAKLAEQMLLDESKMIKYLWKNRALEFRYPKHKNRLDLYAEPKYLMLAKMKYPTIFGDKGRMGFMELYISSLIRTKLQIAKGSS*
JGI25132J35274_100037619F004488GGAGGMFKPIRRFWEAWKNSLFDSYEPKPTVYKVGNKRYVRTKRLRTKSKSKGPYIK*
JGI25132J35274_10003765F000983N/AMKSYHILECNRQQKIADSLYGYYVGITANKSPNGFWNNLSRQEIKDYFSIPNNPTLSWFDDLGLRVRDMSYTIYTEDIGTDIHKDEPPVVAKINFPVLNTSDTYNVWFDDHAREIDRVECDKPIVLRSDILHTVEIGKTAKLPRLQFSFCFYNEPLHLLK*
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