NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25132J35274_1003021

Scaffold JGI25132J35274_1003021


Overview

Basic Information
Taxon OID3300002483 Open in IMG/M
Scaffold IDJGI25132J35274_1003021 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4332
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-104.89Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017223Metagenome242Y
F026716Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
JGI25132J35274_10030216F026716N/AMNCSKNQIFAVETGDYVGQMFAVVEIEKDFIGCLSIPKMENVKIPVESFNSGRNNDIIKLVEELPKDIFKVVEAQYNKNEDPDSRRKQFNTPNILYSEKSVEKN*
JGI25132J35274_10030218F017223N/AMISLPDDFVILKFYELGFYPKYNKFNNVYQCSCPICREGKSLGKKRRCYYIPKNENIFCHNCGWSGKPFKWIKEVSKCSDNDIIKELKEYVPDAEDVIVNREENRPTIQVETLPKDSINLSDKFQLDYYNSNSVVTAVRYLIKERRLDTAVNKPDNLYVSLVDNVHKNRLVVPFINEAGVIEFYQTRTVLNRDNKTKPKYLGKVNAEKTLFNIDKVSSDHDKVYIFEGPINAFFTKNSIAVAGITERGKSFTQRQEEQLNNTLKWYDKVWILDSQWVDQASLVKSEVLLKQNEKVFIWPEKFGKRFKDFNDIAIACKIDEISWDFIQKNTFEGLEGIVKLSE
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