Scaffold JGI25132J35274_1004393

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI25132J35274_1004393

Scaffold JGI25132J35274_1004393

Overview

Basic Information
Taxon OID	3300002483 Open in IMG/M
Scaffold ID	JGI25132J35274_1004393 Open in IMG/M
Source Dataset Name	Marine viral communities from the Pacific Ocean - ETNP_6_30
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3602
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	18.92	Long. (^o)	-104.89	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017135	Metagenome	242	N
F020172	Metagenome / Metatranscriptome	225	N
F064230	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI25132J35274_10043932	F017135	GAGG	MIPIISCPLPGGGQALIKTQDIGGATSGKNPKECXVYVLGWAANGITIDLSLDDFAEIWVSALFDEASNDIEIIFTPDEVH*
JGI25132J35274_10043933	F064230	GAGG	MTSRSYLPQMKCTECYKIMVPQFKKEYPHKLEGWSCDCGNSEKAILRERQYTREQDGDDQQWASGQSI*
JGI25132J35274_10043939	F020172	GGA	MCETVKRAMFCARNKEQHIENLEVVCTLVGRLKGLTQSQYLDLCAKDKLENARTLHMAKHYPA*

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