NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold JGI25129J35166_1014163

Scaffold JGI25129J35166_1014163


Overview

Basic Information
Taxon OID3300002484 Open in IMG/M
Scaffold IDJGI25129J35166_1014163 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_130
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1970
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012401Metagenome / Metatranscriptome281Y
F012463Metagenome280Y
F014127Metagenome265Y

Sequences

Protein IDFamilyRBSSequence
JGI25129J35166_10141631F014127N/AMEEGTTMQQRINNTLGRMMIAGDESSWDYGFLESLQEQLTKRGSLSPRQEEILQQVEGRWSDEALKSRESWGQDWDKDKEAKFMIALRYYHKTGYYGNIVYKYLTTAGDRCAGAPSEKEYNKLVLNKYAAGVIRNLQAEPKFPVGGTAVFRTGARTNRGKPCVILKHGNTEH
JGI25129J35166_10141633F012401AGGAGMIDGILSLEKAALEKLTEDRIASGSLGEEVEEVLSAAGIYWDTLNEEYFSIEMFQRETFERLAKEYASQDYA*
JGI25129J35166_10141636F012463GGTGGMKIGDLVKLIAEPQVDWMFNYLEETFQVLDFPTETGVELKMIGTVPDWIWIIGKDNLELADEEG*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.