NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold C687J35088_10009151

Scaffold C687J35088_10009151


Overview

Basic Information
Taxon OID3300002485 Open in IMG/M
Scaffold IDC687J35088_10009151 Open in IMG/M
Source Dataset NameSoil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3470
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location
Location NameRifle, Colorado, United States
CoordinatesLat. (o)39.534762Long. (o)-107.782602Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033383Metagenome / Metatranscriptome177Y

Sequences

Protein IDFamilyRBSSequence
C687J35088_100091511F033383N/AFMWMHGEPLSSVGNGVSMKAIVDLAPVMDAFIAMRKDELIVWNSIKRTYYVRKGIDLDVYSPLEGVTERLSGEPAVLYVENWRGQRNPLYLCVAMQEVWKRYPNARLHLYNLTDKRMKDTFSALVQNNKWWTFVRSLQGPVQDVNTLYNRVDMVVSGLYPLYARGIEAFGAGKAFIGPGYREDGYPWTCELQPESIAATIIKCWENYGQVNYRQWAIDHHNVADTVKESIAIYERYL*
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