NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25128J35275_1000113

Scaffold JGI25128J35275_1000113


Overview

Basic Information
Taxon OID3300002488 Open in IMG/M
Scaffold IDJGI25128J35275_1000113 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24282
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (97.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027317Metagenome195Y
F027816Metagenome193N
F043886Metagenome155Y
F060826Metagenome132N

Sequences

Protein IDFamilyRBSSequence
JGI25128J35275_100011316F027816GGAGMKSFKNRSHEVACNMMEISIELIDEVFKKVDRIAKRNSHRERNGLKLIDSGHFRWDIRQLKLQTKDKLESIKALLEQYGDDTKLIAKKPEPQETDE*
JGI25128J35275_100011320F027317GAGMRCRLSGENMTQDKTETRRILLPPKKKKVTLETSSIIPATELLLHDAKAIIGAELAHYRSKAVRGVTLDPKEARIVQGYLESLVKIQREEREIADAQDLSNLSDSELMHLAKRVLSNNNNKTIDKNERSDNESE*
JGI25128J35275_100011321F043886N/AMSKKEQKKPSFKELQRAWYKLLDESGFDDIERSGKNRQRFFDEYSGILKRPTSVIRAKYDLFTEKYYNIASFLSYNATFLPKIDRKVLELHGKGYTTQRISDHLREHFEYPLNKKGRSGKPYSVFFVHTKLKYLKLLILIYARTDCLETVKISWQSI*
JGI25128J35275_100011339F060826AGGAGMADSIMETIREKKPKVFSKPTVFFDVDDTLVMWDEKLKGDTVCVNCDGHLNHMVINKGNLEELKRHGSRGIDVIVWSKGGVHWAQSVVRALKLENYVAGIMSKPFCYYDDLKNPLGSHRYFNIEETYANDKE*
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Institute for Fundamental Biomedical Research
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