NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI25128J35275_1012010

Scaffold JGI25128J35275_1012010


Overview

Basic Information
Taxon OID3300002488 Open in IMG/M
Scaffold IDJGI25128J35275_1012010 Open in IMG/M
Source Dataset NameMarine viral communities from the Pacific Ocean - ETNP_2_60
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2234
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Viral Communities From The Subarctic Pacific Ocean And The Gulf Of Mexico

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)18.92Long. (o)-108.7999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047370Metagenome150N

Sequences

Protein IDFamilyRBSSequence
JGI25128J35275_10120101F047370N/AAGAATLTPVITKGLGKVGRLMIGAKSKDAKELVNIARDKGLPVPMVMTAQEGTGLLGGFASKYFKVLGIMPFINGIGKEALQGAEQAAGRNYLNNDVLKYGPLVKTGMLSATIWKQAEQAFIQNSNLINASYKAFDTLADTIGNPKVIPTSHVKFMAKNYTDELFMKYPGLRSYAQDAGGTIDLKALEKLQGTGDPLALFFRHMNQIEDFVTPKQYKGMMEELNRAISTTTYDNIRPTLWSIREALENDLNSFGSNITKETFLKDDGVKAAYETLAKTNKAAADADMALKITESEKLRDKLYGANDTFSTLMNFYQRANATKVFRDYNATTFTNKALAGIGGMEKKKSQRFFNDLANDVFTRGDPTAIKQFRQLLGADKIVSKKTGQAIGVTKGGGEALFNAAKARWMFNSFYKGFDSASSPAGRTMIDEIMNESTVRAGINGTVDVMESMVQKGDVVDFSIDKVKAGTNVFDATKIKFSPKDTSGFNINKFMRELGIADPTDDVAKEKMISILGGRAQSKEFEKFLTYMKAVSDTPIADTSTFMQRRLQLGGLNSFTGALVLGGSAAVNPFAPALFILLGRRAGQILTDPIAMRAFNDALNPDEQIKLLMGQKVGNGVPGVLGIGRRYFKGRDIQTAANILKSPGVVGRLGLTQKREAFARLVNYLNESDADVPRVDPKTVTPEEITERMGQLDAKVPAPNYNEDTIPKKNFETMFAQDYSGSSGDLQTDTNAVSMLSTATQN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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