NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24188J35168_1013885

Scaffold JGI24188J35168_1013885


Overview

Basic Information
Taxon OID3300002492 Open in IMG/M
Scaffold IDJGI24188J35168_1013885 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant NP 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2523
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004307Metagenome / Metatranscriptome444Y
F008499Metagenome / Metatranscriptome332Y
F025895Metagenome / Metatranscriptome199Y

Sequences

Protein IDFamilyRBSSequence
JGI24188J35168_10138852F025895GGAGMNELIAWIIAAAVILLLANTNVADGLFDALDLSDNLRRAAEWTRGVRGAPAAVSAASFFVLAYVFGALAYRYDLVPTWRFIQPVAQDVLSSGAEWLTLFAVFLTLLPTLIELASVGLVQRSIKALEYMTYFFIFFDLVTDYTEAAALVEVWQRSGLFDPLPSLIANAAIVLAKISWTFAASFAFEFLAILFAVTGLLLAANVRAPTAGGGTR*
JGI24188J35168_10138855F008499AGGAGGVGTKKSRSEPRWKRKEREVIKFLQAAFGRVSDPTLARLLTRTGRVGHLTRFGFDGIVGNEPGFIVEVKARKGMLAKQTIEALLQTVDRAAQFDRIPLLAVVLGDDVPARTASGAKVDREWVLIPLRELKRLVGKEVSYE*
JGI24188J35168_10138856F004307N/AVKLGDSNDERPVLNGAYIGRFLGVKERQRPTFDTRLNSEPELEDVFVFEFEVDDEELPQPIRVAKWVRKPQRLSHPGKNGKVTNLYKTLASLYGVAQMTDEQLAGAEEFVMSAVGREYQLTIETKPSGWYEIIHXAPVRRARRKEVMXGNEEVPF*
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