NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24185J35167_1023195

Scaffold JGI24185J35167_1023195


Overview

Basic Information
Taxon OID3300002493 Open in IMG/M
Scaffold IDJGI24185J35167_1023195 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1657
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028057Metagenome192N
F056129Metagenome138Y
F056953Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
JGI24185J35167_10231951F056953AGGAGGMYSNFKFQSAKADLAFAFTHKPTDSMGQVEIAFLRSILSAAAKYGRVTPDDVYRAVESSGVFDLDLDEGEKDKIVADLWNIGDNYVGALSPAQAAELRKLRNLCHRANKGDMDAVMMIADMI*
JGI24185J35167_10231952F056129AGGAGMTEYNGWPNRFTWTISLYCESREDVQSLREYLEEIAADLPLPAMDLLLSAVASVNWEYLERAFSPTDAD*
JGI24185J35167_10231953F028057N/AMTKLNTNQKRRLSRAISRAASAELAARQAQLRLIRAERRVVAEEFESLRRIAIIISLPILFLLCAIFSSFWFILIAEAIVKSAR*
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