NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold BRMGV_1053473

Scaffold BRMGV_1053473


Overview

Basic Information
Taxon OID3300002495 Open in IMG/M
Scaffold IDBRMGV_1053473 Open in IMG/M
Source Dataset Name454 Fosmid Sequence
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1465
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated Sediment → Mangrove Soil → Mangrove Soil Microbial Communities From Bertioga, Brazil, Sampling Enzymes

Source Dataset Sampling Location
Location NameBertioga - SP
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m).3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010721Metagenome / Metatranscriptome300Y

Sequences

Protein IDFamilyRBSSequence
BRMGV_10534734F010721AGGMQHRRRVFVETPKGRISAGFSVPVTAAAADVSMRLRERGRAPYRVRFDREQDCWIAAVIDWRRAA*
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