NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24704J35079_10027542

Scaffold JGI24704J35079_10027542


Overview

Basic Information
Taxon OID3300002505 Open in IMG/M
Scaffold IDJGI24704J35079_10027542 Open in IMG/M
Source Dataset NameNeocapritermes taracua P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Nt197 P3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2097
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Odonata → Zygoptera → Coenagrionoidea → Coenagrionidae → Ischnura → Ischnura elegans(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F076214Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
JGI24704J35079_100275422F076214N/AMEADHGSEXSXSAYVAPYCSVAEAMKLISHPFDGDKRRLREFIENVDVAFELVHPNKHEILLKFVKTKITGDARSKLMVRDLTHTWALVKGILEENYAVRRTLDYYACKMFSARQEKNESVASWENRIDEMQTELREAARRVCMPEEIRGAVGPIGHLGKACFIQGLSSERIQTIVRSRGESIALSQAVEFSLEESAQFLPIEKNPWPQGISSGVLIVIE*
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