Scaffold JGI24186J35511_1005352

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold JGI24186J35511_1005352

Scaffold JGI24186J35511_1005352

Overview

Basic Information
Taxon OID	3300002510 Open in IMG/M
Scaffold ID	JGI24186J35511_1005352 Open in IMG/M
Source Dataset Name	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3217
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae → Haladaptatus → Haladaptatus paucihalophilus → Haladaptatus paucihalophilus DX253	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.534	Long. (^o)	-110.7978	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003460	Metagenome / Metatranscriptome	485	Y
F004367	Metagenome / Metatranscriptome	441	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24186J35511_10053521	F003460	GGAG	MPKASRDERYMHDLQHAYEILHGVLAPRGLYAEVGMTLLVNLRRPSELRDVVVELVIRGRVIGSPVWRVAEGLRVPGRMKLRSVASVLFGLFMRAAYDIEASISLPGEDNPQRPGGARP*
JGI24186J35511_10053524	F003460	GGGGG	MPKAARDERYFHDLQHAYEVLHSVLAPRGLYAEVGMMLLVNMRRPAELRDVLVELVIRGRAIGSPVWRVAEGLRVPGRMKLRSVASVLFGLMMRAAYDVEAAISLPGDERPQRPGGARP*
JGI24186J35511_10053525	F004367	AGGAGG	MSGPTSGNGRDESDQWAVSLLTNAGASVGRVLDDRQVHAVNLAIEVFAYLLAALPSSQVDVRDVIRMLKFYSRGVNDAKGSEG*

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