 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002510 Open in IMG/M |
| Scaffold ID | JGI24186J35511_1012431 Open in IMG/M |
| Source Dataset Name | Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1804 |
| Total Scaffold Genes | 1 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Novel Protein Genes | 1 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 1 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Lyngbya → unclassified Lyngbya → Lyngbya sp. PCC 8106 | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Yellowstone National Park, Wyoming, USA | |||||||
| Coordinates | Lat. (o) | 44.534 | Long. (o) | -110.7978 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F009447 | Metagenome / Metatranscriptome | 317 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24186J35511_10124311 | F009447 | N/A | EITGDPVEDTIIPHAILVWTCMNDQPWSEEVYHGWLDTLLKAGSAEAAYLAASLWPAHDLMEKVTYRPARWLVYRGQLDAEAERLILTEMLKGDYGPRTSLYGSFEYDDVPHPEQLSKQYIERHGFTHPICGLVEPIELQWDSDLKKRIQAVLAAPSWSEGVKGAAMLLYLSLNAFNELSAPLQELLNTLEQNLFKLDERHTNIINFHMDKIEKIDYNSIKDYINYLIILYNKIINESDLSMKIFSKYMSIGLKTKDILYIGKDLRDMIFNLMLKKEKVESWLEKQADDSRIKDILLATYMTKRIDYTDLRSITIDEELKTGQVEKKIEDIYGKIKYVDKIRLFINQARIYFEPGRDSYKICDFVEDILKRETRVNFSYNFREDYAKIIHSWHPSRNYFLIANMFLSSGHIGLYLYYEILKKWVWIIVDFIDHIMEEKELKAYSDTRKKIIENLYRYAMNDIEIKLNLYLNKIESNNLPYEEMKNELIIELINMIENNYDKISEYFKNESKLIMARKVISSNIGLLRGKLRNPRLTGLLHIDNKSQNMIIY* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |