NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24186J35511_1017890

Scaffold JGI24186J35511_1017890


Overview

Basic Information
Taxon OID3300002510 Open in IMG/M
Scaffold IDJGI24186J35511_1017890 Open in IMG/M
Source Dataset NameAnoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1355
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat → Anoxygenic And Chlorotrophic Microbial Mat Microbial Communities From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameYellowstone National Park, Wyoming, USA
CoordinatesLat. (o)44.534Long. (o)-110.7978Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025895Metagenome / Metatranscriptome199Y
F076715Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
JGI24186J35511_10178903F076715GAGGMWWKIEPIPHQELEDWERALVRCENRAKRDPMSRAAGVFVIFVREGGTRPEYAPGDKAPDGAYLVGKWTLKKKGWMWYD*
JGI24186J35511_10178904F025895GGTGGMTDLIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAADWAGGVRGVPAGVAAACFFVMAYVFGALAYRYDLVPTWRFMQPIANDVLSTGAEWLTLFVVFLTLLPTLIEIAAAKLAQRDVRMLQWMVYFFIFFDIVTDYTEAVALVDVWRRSGLFAPLPDVLEGAAVVLTKIGWTFAASFAFEFLAVLLALTALLLAGNVKAPNVGSGGGR*
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